Merge branch 'jono/multiStateVector' into 'release'

Add MultiStateVector

See merge request !99

storage/utility/multiStateVector.go

+////////////////////////////////////////////////////////////////////////////////
+// Copyright © 2020 xx network SEZC                                           //
+//                                                                            //
+// Use of this source code is governed by a license that can be found in the  //
+// LICENSE file                                                               //
+////////////////////////////////////////////////////////////////////////////////
+
+package utility
+
+import (
+	"bytes"
+	"encoding/binary"
+	"github.com/pkg/errors"
+	"gitlab.com/elixxir/client/storage/versioned"
+	"gitlab.com/xx_network/primitives/netTime"
+	"math"
+	"sync"
+)
+
+// Storage key and version.
+const (
+	multiStateVectorKey     = "multiStateVector/"
+	multiStateVectorVersion = 0
+)
+
+// Minimum and maximum allowed number of states.
+const (
+	minNumStates = 2
+	maxNumStates = 8
+)
+
+// Error messages.
+const (
+	keyNumMaxErr = "key number %d greater than max %d"
+	stateMaxErr  = "given state %d greater than max %d"
+
+	// NewMultiStateVector
+	numStateMinErr = "number of received states %d must be greater than %d"
+	numStateMaxErr = "number of received states %d greater than max %d"
+
+	// MultiStateVector.Set
+	setStateErr     = "failed to set state of key %d: %+v"
+	saveSetStateErr = "failed to save MultiStateVector after setting key %d state to %d: %+v"
+
+	// MultiStateVector.SetMany
+	setManyStateErr     = "failed to set state of key %d (%d/%d): %+v"
+	saveManySetStateErr = "failed to save MultiStateVector after setting keys %d state to %d: %+v"
+
+	// MultiStateVector.set
+	setGetStateErr = "could not get state of key %d: %+v"
+	oldStateMaxErr = "stored state %d greater than max %d (this should not happen; maybe a storage failure)"
+	stateChangeErr = "cannot change state of key %d from %d to %d"
+
+	// LoadMultiStateVector
+	loadGetMsvErr       = "failed to load MultiStateVector from storage: %+v"
+	loadUnmarshalMsvErr = "failed to unmarshal MultiStateVector loaded from storage: %+v"
+
+	// MultiStateVector.save
+	saveUnmarshalMsvErr = "failed to marshal MultiStateVector for storage: %+v"
+
+	// MultiStateVector.marshal
+	buffWriteNumKeysErr         = "numKeys: %+v"
+	buffWriteNumStatesErr       = "numStates: %+v"
+	buffWriteVectLenErr         = "length of vector: %+v"
+	buffWriteVectBlockErr       = "vector block %d/%d: %+v"
+	buffWriteStateCountBlockErr = "state use counter %d: %+v"
+
+	// MultiStateVector.unmarshal
+	buffReadNumKeysErr         = "numKeys: %+v"
+	buffReadNumStatesErr       = "numStates: %+v"
+	buffReadVectLenErr         = "length of vector: %+v"
+	buffReadVectBlockErr       = "vector block %d/%d: %+v"
+	buffReadStateCountBlockErr = "state use counter %d: %+v"
+
+	// checkStateMap
+	stateMapLenErr      = "state map has %d states when %d are required"
+	stateMapStateLenErr = "state %d in state map has %d state transitions when %d are required"
+)
+
+// MultiStateVector stores a list of a set number of keys and their state. It
+// supports any number of states, unlike the StateVector. It is storage backed.
+type MultiStateVector struct {
+	numKeys         uint16 // Total number of keys
+	numStates       uint8  // Number of state per key
+	bitSize         uint8  // Number of state bits per key
+	numKeysPerBlock uint8  // Number of keys that fit in a block
+	wordSize        uint8  // Size of each word
+
+	// Bitfield for key states
+	vect []uint64
+
+	// A list of states and which states they can move to
+	stateMap [][]bool
+
+	// Stores the number of keys per state
+	stateUseCount []uint16
+
+	key string // Unique string used to save/load object from storage
+	kv  *versioned.KV
+	mux sync.RWMutex
+}
+
+// NewMultiStateVector generates a new MultiStateVector with the specified
+// number of keys and bits pr state per keys. The max number of states in 64.
+func NewMultiStateVector(numKeys uint16, numStates uint8, stateMap [][]bool,
+	key string, kv *versioned.KV) (*MultiStateVector, error) {
+
+	// Return an error if the number of states is out of range
+	if numStates < minNumStates {
+		return nil, errors.Errorf(numStateMinErr, numStates, minNumStates)
+	} else if numStates > maxNumStates {
+		return nil, errors.Errorf(numStateMaxErr, numStates, maxNumStates)
+	}
+
+	// Return an error if the state map is of the wrong length
+	err := checkStateMap(numStates, stateMap)
+	if err != nil {
+		return nil, err
+	}
+
+	// Calculate the number of bits needed to represent all the states
+	numBits := uint8(math.Ceil(math.Log2(float64(numStates))))
+
+	// Calculate number of 64-bit blocks needed to store bitSize for numKeys
+	numBlocks := ((numKeys * uint16(numBits)) + 63) / 64
+
+	msv := &MultiStateVector{
+		numKeys:         numKeys,
+		numStates:       numStates,
+		bitSize:         numBits,
+		numKeysPerBlock: 64 / numBits,
+		wordSize:        (64 / numBits) * numBits,
+		vect:            make([]uint64, numBlocks),
+		stateMap:        stateMap,
+		stateUseCount:   make([]uint16, numStates),
+		key:             makeMultiStateVectorKey(key),
+		kv:              kv,
+	}
+
+	msv.stateUseCount[0] = numKeys
+
+	return msv, msv.save()
+}
+
+// Get returns the state of the key.
+func (msv *MultiStateVector) Get(keyNum uint16) (uint8, error) {
+	msv.mux.RLock()
+	defer msv.mux.RUnlock()
+
+	return msv.get(keyNum)
+}
+
+// get returns the state of the specified key. This function is not thread-safe.
+func (msv *MultiStateVector) get(keyNum uint16) (uint8, error) {
+	// Return an error if the key number is greater than the number of keys
+	if keyNum > msv.numKeys-1 {
+		return 0, errors.Errorf(keyNumMaxErr, keyNum, msv.numKeys-1)
+	}
+
+	// Calculate block and position of the keyNum
+	block, pos := msv.getMultiBlockAndPos(keyNum)
+
+	bitMask := uint64(math.MaxUint64) >> (64 - msv.bitSize)
+
+	shift := 64 - pos - uint16(msv.bitSize)
+
+	return uint8((msv.vect[block] >> shift) & bitMask), nil
+}
+
+// Set marks the key with the given state. Returns an error for an invalid state
+// or if the state change is not allowed.
+func (msv *MultiStateVector) Set(keyNum uint16, state uint8) error {
+	msv.mux.Lock()
+	defer msv.mux.Unlock()
+
+	// Set state of the key
+	err := msv.set(keyNum, state)
+	if err != nil {
+		return errors.Errorf(setStateErr, keyNum, err)
+	}
+
+	// Save changes to storage
+	err = msv.save()
+	if err != nil {
+		return errors.Errorf(saveSetStateErr, keyNum, state, err)
+	}
+
+	return nil
+}
+
+// SetMany marks each of the keys with the given state. Returns an error for an
+// invalid state or if the state change is not allowed.
+func (msv *MultiStateVector) SetMany(keyNums []uint16, state uint8) error {
+	msv.mux.Lock()
+	defer msv.mux.Unlock()
+
+	// Set state of each key
+	for i, keyNum := range keyNums {
+		err := msv.set(keyNum, state)
+		if err != nil {
+			return errors.Errorf(setManyStateErr, keyNum, i+1, len(keyNums), err)
+		}
+	}
+
+	// Save changes to storage
+	err := msv.save()
+	if err != nil {
+		return errors.Errorf(saveManySetStateErr, keyNums, state, err)
+	}
+
+	return nil
+}
+
+// set sets the specified key to the specified state. An error is returned if
+// the given state is invalid or the state change is not allowed by the state
+// map.
+func (msv *MultiStateVector) set(keyNum uint16, state uint8) error {
+	// Return an error if the key number is greater than the number of keys
+	if keyNum > msv.numKeys-1 {
+		return errors.Errorf(keyNumMaxErr, keyNum, msv.numKeys-1)
+	}
+
+	// Return an error if the state is larger than the max states
+	if state > msv.numStates-1 {
+		return errors.Errorf(stateMaxErr, state, msv.numStates-1)
+	}
+
+	// Get the current state
+	oldState, err := msv.get(keyNum)
+	if err != nil {
+		return errors.Errorf(setGetStateErr, keyNum, err)
+	}
+
+	// Check that the current state is within the allowed states
+	if oldState > msv.numStates-1 {
+		return errors.Errorf(oldStateMaxErr, oldState, msv.numStates-1)
+	}
+
+	// Check that the state change is allowed (only if state map was supplied)
+	if msv.stateMap != nil && !msv.stateMap[oldState][state] {
+		return errors.Errorf(stateChangeErr, keyNum, oldState, state)
+	}
+
+	// Calculate block and position of the key
+	block, _ := msv.getMultiBlockAndPos(keyNum)
+
+	// Clear the key's state
+	msv.vect[block] &= ^getSelectionMask(keyNum, msv.bitSize)
+
+	// Set the state
+	msv.vect[block] |= shiftBitsOut(uint64(state), keyNum, msv.bitSize)
+
+	// Increment/decrement state counters
+	msv.stateUseCount[oldState]--
+	msv.stateUseCount[state]++
+
+	return nil
+}
+
+// GetNumKeys returns the total number of keys.
+func (msv *MultiStateVector) GetNumKeys() uint16 {
+	msv.mux.RLock()
+	defer msv.mux.RUnlock()
+	return msv.numKeys
+}
+
+// GetCount returns the number of keys with the given state.
+func (msv *MultiStateVector) GetCount(state uint8) (uint16, error) {
+	msv.mux.RLock()
+	defer msv.mux.RUnlock()
+
+	// Return an error if the state is larger than the max states
+	if int(state) >= len(msv.stateUseCount) {
+		return 0, errors.Errorf(stateMaxErr, state, msv.numStates-1)
+	}
+
+	return msv.stateUseCount[state], nil
+}
+
+// GetKeys returns a list of all keys with the specified status.
+func (msv *MultiStateVector) GetKeys(state uint8) ([]uint16, error) {
+	msv.mux.RLock()
+	defer msv.mux.RUnlock()
+
+	// Return an error if the state is larger than the max states
+	if state > msv.numStates-1 {
+		return nil, errors.Errorf(stateMaxErr, state, msv.numStates-1)
+	}
+
+	// Initialise list with capacity set to number of keys in the state
+	keys := make([]uint16, 0, msv.stateUseCount[state])
+
+	// Loop through each key and add any unused to the list
+	for keyNum := uint16(0); keyNum < msv.numKeys; keyNum++ {
+		keyState, err := msv.get(keyNum)
+		if err != nil {
+			return nil, errors.Errorf(keyNumMaxErr, keyNum, err)
+		}
+		if keyState == state {
+			keys = append(keys, keyNum)
+		}
+	}
+
+	return keys, nil
+}
+
+// DeepCopy creates a deep copy of the MultiStateVector without a storage
+// backend. The deep copy can only be used for functions that do not access
+// storage.
+func (msv *MultiStateVector) DeepCopy() *MultiStateVector {
+	msv.mux.RLock()
+	defer msv.mux.RUnlock()
+
+	// Copy all primitive values into the new MultiStateVector
+	newMSV := &MultiStateVector{
+		numKeys:         msv.numKeys,
+		numStates:       msv.numStates,
+		bitSize:         msv.bitSize,
+		numKeysPerBlock: msv.numKeysPerBlock,
+		wordSize:        msv.wordSize,
+		vect:            make([]uint64, len(msv.vect)),
+		stateMap:        make([][]bool, len(msv.stateMap)),
+		stateUseCount:   make([]uint16, len(msv.stateUseCount)),
+		key:             msv.key,
+	}
+
+	// Copy over all values in the vector
+	copy(newMSV.vect, msv.vect)
+
+	// Copy over all values in the state map
+	if msv.stateMap == nil {
+		newMSV.stateMap = nil
+	} else {
+		for state, stateTransitions := range msv.stateMap {
+			newMSV.stateMap[state] = make([]bool, len(stateTransitions))
+			copy(newMSV.stateMap[state], stateTransitions)
+		}
+	}
+
+	// Copy over all values in the state use counter
+	copy(newMSV.stateUseCount, msv.stateUseCount)
+
+	return newMSV
+}
+
+// getMultiBlockAndPos calculates the block index and the position within that
+// block of the key.
+func (msv *MultiStateVector) getMultiBlockAndPos(keyNum uint16) (
+	block, pos uint16) {
+	block = keyNum / uint16(msv.numKeysPerBlock)
+	pos = (keyNum % uint16(msv.numKeysPerBlock)) * uint16(msv.bitSize)
+
+	return block, pos
+}
+
+// checkStateMap checks that the state map has the correct number of states and
+// correct number of state transitions per state. Returns an error if any of the
+// lengths are incorrect. Returns nil if they are all correct or if the stateMap
+// is nil.
+func checkStateMap(numStates uint8, stateMap [][]bool) error {
+	if stateMap == nil {
+		return nil
+	}
+
+	// Checks the length of the first dimension of the state map
+	if len(stateMap) != int(numStates) {
+		return errors.Errorf(stateMapLenErr, len(stateMap), numStates)
+	}
+
+	// Checks the length of each transition slice for each state
+	for i, state := range stateMap {
+		if len(state) != int(numStates) {
+			return errors.Errorf(stateMapStateLenErr, i, len(state), numStates)
+		}
+	}
+
+	return nil
+}
+
+////////////////////////////////////////////////////////////////////////////////
+// Selection Bit Mask                                                         //
+////////////////////////////////////////////////////////////////////////////////
+
+// getSelectionMask returns the selection bit mask for the given key number and
+// state bit size. The masks for each state is found by right shifting
+// bitSize * keyNum.
+func getSelectionMask(keyNum uint16, bitSize uint8) uint64 {
+	// Get the mask at the zeroth position at the bit size; these masks look
+	// like the following for bit sizes 1 through 4
+	//	0b1000000000000000000000000000000000000000000000000000000000000000
+	//	0b1100000000000000000000000000000000000000000000000000000000000000
+	//	0b1110000000000000000000000000000000000000000000000000000000000000
+	//	0b1111000000000000000000000000000000000000000000000000000000000000
+	initialMask := uint64(math.MaxUint64) << (64 - bitSize)
+
+	// Shift the mask to the keyNum location; for example, a mask of size 3
+	// in position 3 would be:
+	//	0b1110000000000000000000000000000000000000000000000000000000000000 ->
+	//	0b0000000001110000000000000000000000000000000000000000000000000000
+	shiftedMask := shiftBitsIn(initialMask, keyNum, bitSize)
+
+	return shiftedMask
+}
+
+// shiftBitsOut shifts the most significant bits of size bitSize to the left to
+// the position of keyNum.
+func shiftBitsOut(bits uint64, keyNum uint16, bitSize uint8) uint64 {
+	// Return original bits when the bit size is zero
+	if bitSize == 0 {
+		return bits
+	}
+
+	// Calculate the number of keys stored in each block; blocks are designed to
+	// only the states that cleaning fit fully within the block. All reminder
+	// trailing bits are unused. The below code calculates the number of actual
+	// keys in a block.
+	keysPerBlock := 64 / uint16(bitSize)
+
+	// Calculate the index of the key in the local block
+	keyIndex := keyNum % keysPerBlock
+
+	// The starting bit position of the key in the block
+	pos := keyIndex * uint16(bitSize)
+
+	// Shift the bits left to account for the size of the key
+	bitSizeShift := 64 - uint64(bitSize)
+	leftShift := bits << bitSizeShift
+
+	// Shift the initial mask based upon the bit position of the key
+	shifted := leftShift >> pos
+
+	return shifted
+}
+
+// shiftBitsIn shifts the least significant bits of size bitSize to the right to
+// the position of keyNum.
+func shiftBitsIn(bits uint64, keyNum uint16, bitSize uint8) uint64 {
+	// Return original bits when the bit size is zero
+	if bitSize == 0 {
+		return bits
+	}
+
+	// Calculate the number of keys stored in each block; blocks are designed to
+	// only the states that cleaning fit fully within the block. All reminder
+	// trailing bits are unused. The below code calculates the number of actual
+	// keys in a block.
+	keysPerBlock := 64 / uint16(bitSize)
+
+	// Calculate the index of the key in the local block
+	keyIndex := keyNum % keysPerBlock
+
+	// The starting bit position of the key in the block
+	pos := keyIndex * uint16(bitSize)
+
+	// Shift the initial mask based upon the bit position of the key
+	shifted := bits >> pos
+
+	return shifted
+}
+
+////////////////////////////////////////////////////////////////////////////////
+// Storage Functions                                                          //
+////////////////////////////////////////////////////////////////////////////////
+
+// LoadMultiStateVector loads a MultiStateVector with the specified key from the
+// given versioned storage.
+func LoadMultiStateVector(stateMap [][]bool, key string, kv *versioned.KV) (
+	*MultiStateVector, error) {
+	msv := &MultiStateVector{
+		stateMap: stateMap,
+		key:      makeMultiStateVectorKey(key),
+		kv:       kv,
+	}
+
+	// Load MultiStateVector data from storage
+	obj, err := kv.Get(msv.key, multiStateVectorVersion)
+	if err != nil {
+		return nil, errors.Errorf(loadGetMsvErr, err)
+	}
+
+	// Unmarshal data
+	err = msv.unmarshal(obj.Data)
+	if err != nil {
+		return nil, errors.Errorf(loadUnmarshalMsvErr, err)
+	}
+
+	return msv, nil
+}
+
+// save stores the MultiStateVector in storage.
+func (msv *MultiStateVector) save() error {
+	// Marshal the MultiStateVector
+	data, err := msv.marshal()
+	if err != nil {
+		return errors.Errorf(saveUnmarshalMsvErr, err)
+	}
+
+	// Create the versioned object
+	obj := &versioned.Object{
+		Version:   multiStateVectorVersion,
+		Timestamp: netTime.Now(),
+		Data:      data,
+	}
+
+	return msv.kv.Set(msv.key, multiStateVectorVersion, obj)
+}
+
+// Delete removes the MultiStateVector from storage.
+func (msv *MultiStateVector) Delete() error {
+	msv.mux.Lock()
+	defer msv.mux.Unlock()
+	return msv.kv.Delete(msv.key, multiStateVectorVersion)
+}
+
+// marshal serialises the MultiStateVector into a byte slice.
+func (msv *MultiStateVector) marshal() ([]byte, error) {
+	var buff bytes.Buffer
+	buff.Grow((4 * 4) + 8 + (8 * len(msv.vect)))
+
+	// Write numKeys to buffer
+	err := binary.Write(&buff, binary.LittleEndian, msv.numKeys)
+	if err != nil {
+		return nil, errors.Errorf(buffWriteNumKeysErr, err)
+	}
+
+	// Write numStates to buffer
+	err = binary.Write(&buff, binary.LittleEndian, msv.numStates)
+	if err != nil {
+		return nil, errors.Errorf(buffWriteNumStatesErr, err)
+	}
+
+	// Write length of vect to buffer
+	err = binary.Write(&buff, binary.LittleEndian, uint64(len(msv.vect)))
+	if err != nil {
+		return nil, errors.Errorf(buffWriteVectLenErr, err)
+	}
+
+	// Write vector to buffer
+	for i, block := range msv.vect {
+		err = binary.Write(&buff, binary.LittleEndian, block)
+		if err != nil {
+			return nil, errors.Errorf(
+				buffWriteVectBlockErr, i, len(msv.vect), err)
+		}
+	}
+
+	// Write state use counter slice to buffer
+	for state, count := range msv.stateUseCount {
+		err = binary.Write(&buff, binary.LittleEndian, count)
+		if err != nil {
+			return nil, errors.Errorf(buffWriteStateCountBlockErr, state, err)
+		}
+	}
+
+	return buff.Bytes(), nil
+}
+
+// unmarshal deserializes a byte slice into a MultiStateVector.
+func (msv *MultiStateVector) unmarshal(b []byte) error {
+	buff := bytes.NewReader(b)
+
+	// Write numKeys to buffer
+	err := binary.Read(buff, binary.LittleEndian, &msv.numKeys)
+	if err != nil {
+		return errors.Errorf(buffReadNumKeysErr, err)
+	}
+
+	// Write numStates to buffer
+	err = binary.Read(buff, binary.LittleEndian, &msv.numStates)
+	if err != nil {
+		return errors.Errorf(buffReadNumStatesErr, err)
+	}
+
+	// Calculate the number of bits needed to represent all the states
+	msv.bitSize = uint8(math.Ceil(math.Log2(float64(msv.numStates))))
+
+	// Calculate numbers of keys per block
+	msv.numKeysPerBlock = 64 / msv.bitSize
+
+	// Calculate the word size
+	msv.wordSize = msv.numKeysPerBlock * msv.bitSize
+
+	// Write vect to buffer
+	var vectLen uint64
+	err = binary.Read(buff, binary.LittleEndian, &vectLen)
+	if err != nil {
+		return errors.Errorf(buffReadVectLenErr, err)
+	}
+
+	// Create new vector
+	msv.vect = make([]uint64, vectLen)
+
+	// Write vect to buffer
+	for i := range msv.vect {
+		err = binary.Read(buff, binary.LittleEndian, &msv.vect[i])
+		if err != nil {
+			return errors.Errorf(buffReadVectBlockErr, i, vectLen, err)
+		}
+	}
+
+	// Create new state use counter
+	msv.stateUseCount = make([]uint16, msv.numStates)
+	for i := range msv.stateUseCount {
+		err = binary.Read(buff, binary.LittleEndian, &msv.stateUseCount[i])
+		if err != nil {
+			return errors.Errorf(buffReadStateCountBlockErr, i, err)
+		}
+	}
+
+	return nil
+}
+
+// makeMultiStateVectorKey generates the unique key used to save a
+// MultiStateVector to storage.
+func makeMultiStateVectorKey(key string) string {
+	return multiStateVectorKey + key
+}